PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN28281.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TCP
Protein Properties Length: 345aa    MW: 36798.6 Da    PI: 9.5511
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN28281.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP126.72.4e-3966157298
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaaksk 98 
                 a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tgt++++as+  a+ +s s ++ s +++      ++
  KHN28281.1  66 APKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAGNSLSPQAASLSSS-----LHQ 157
                 789******************************************************************77744444444442222211.....111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.7E-3271158IPR005333Transcription factor, TCP
PROSITE profilePS5136928.01672126IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0000257Molecular Functionnitrilase activity
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MDPKGSKQQP QQSQEVVPNF LSLPQQQQGN TNNNNMGENK PAEVKDFQIV VAENKEESKK  60
QQQQLAPKRS SNKDRHTKVE GRGRRIRMPA LCAARIFQLT RELGHKSDGE TIQWLLQQAE  120
PSIIAATGTG TIPASALAAA GNSLSPQAAS LSSSLHQHQQ KIDELGGSGG SSSRASWQMV  180
GGNLGRPHLG VGVATAAGLW PPHVSGFGFQ TPPTTTTPTT TTSSSGPSNA TLATESSNYL  240
QKIAFPGFDL PTSATNMMGH MSFTSILGGG GGGGAQHMPG LELGLSQDGH IGVLNQQALN  300
QIYQQMNQAG RVHHHQHQHH HQHHQQQQHH QQTPAKDDSQ GSGGQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00005PBMTransfer from 484486Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2350440.0AC235044.1 Glycine max strain Williams 82 clone GM_WBb0005G15, complete sequence.
GenBankAC2352650.0AC235265.1 Glycine max strain Williams 82 clone GM_WBb0041K04, complete sequence.
GenBankAC2362960.0AC236296.1 Glycine max strain Williams 82 clone GM_WBb0094F23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003549105.10.0PREDICTED: transcription factor TCP20-like
SwissprotQ9LSD56e-77TCP20_ARATH; Transcription factor TCP20
TrEMBLA0A0B2R2K60.0A0A0B2R2K6_GLYSO; Transcription factor TCP20
TrEMBLI1MLF50.0I1MLF5_SOYBN; Uncharacterized protein
STRINGGLYMA16G05840.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33393269
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27010.12e-62TCP family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]